3.4 Genetic selection and propagation of high-resin phenotypes

Here’s a detailed overview of genetic selection and propagation of high-resin phenotypes in Aquilaria spp. or other resin-producing trees:


1. Background

Resin production in Aquilaria (agarwood) is a secondary metabolite response triggered by wounding, microbial infection, or stress. Resin yield and quality vary by:

  • Genotype: Some trees naturally produce more resin with higher sesquiterpene and chromone content.
  • Age and size: Older, mature trees usually have higher resin potential.
  • Environmental factors: Soil, water, and climate influence resin biosynthesis.

Goal: Identify and propagate elite trees with high-resin-producing potential for sustainable plantations and commercial production.


2. Genetic Selection

A. Phenotypic Selection

  • Observation-based: Identify trees with visible resin production after natural wounding or inoculation.
  • Resin scoring: Grade trees based on quantity, aroma, or wood discoloration.
  • Limitations: Environmental influence may mask genetic potential.

B. Chemical Profiling

  • Analyze sesquiterpene and chromone content using:
    • Gas Chromatography-Mass Spectrometry (GC-MS)
    • High-Performance Liquid Chromatography (HPLC)
  • Identify trees with superior resin composition for fragrance or medicinal value.

C. Molecular Marker-Assisted Selection

  • Use DNA markers (SSR, AFLP, SNP) linked to resin biosynthesis genes.
  • Advantages:
    • Early selection before resin formation
    • Higher accuracy and efficiency
    • Can distinguish genetically superior trees even under variable environments

3. Propagation Techniques for High-Resin Genotypes

A. Vegetative Propagation

  1. Cuttings
    • Semi-hardwood or hardwood cuttings treated with rooting hormones (IBA/NAA).
    • Pros: Clonal propagation of elite trees
    • Cons: Slow rooting in some genotypes
  2. Grafting
    • Scion from high-resin tree grafted onto rootstock.
    • Pros: Maintains genetic and resin traits; faster establishment
    • Cons: Labor-intensive, rootstock compatibility required

B. Micropropagation

  1. Nodal Explants & Shoot Culture
    • Use meristems or nodal segments from elite trees.
    • Produce large numbers of clones under sterile, controlled conditions.
  2. Somatic Embryogenesis
    • Induce embryos from callus or somatic tissue of high-resin genotypes.
    • Allows mass propagation and potential synthetic seed production.
  3. Callus & Suspension Culture
    • Initiate callus from elite tree tissues.
    • Can be used for:
      • Secondary metabolite production in vitro
      • Reintroduction into plants via organogenesis

C. Synthetic Seed Production

  • Encapsulated somatic embryos or shoot tips from high-resin trees.
  • Advantages:
    • Long-term storage
    • Easy transport
    • Rapid plantation establishment with elite genotypes

4. Enhancing Resin Production

Even after propagation, resin yield can be enhanced through biotic or abiotic methods:

  • Artificial wounding combined with microbial inoculation (e.g., Fusarium oxysporumLasiodiplodia theobromae)
  • Chemical elicitors (methyl jasmonate, salicylic acid)
  • Optimized cultivation (fertilization, irrigation, pruning)

5. Integrated Strategy for High-Resin Phenotypes

  1. Identify elite trees via phenotyping, chemical profiling, or molecular markers.
  2. Propagate clonally through micropropagation, grafting, or cuttings.
  3. Establish plantations using elite clones.
  4. Apply controlled inoculation or elicitation for resin induction.
  5. Monitor resin quality and yield for continuous selection and improvement.

6. Key Benefits

  • Consistent high-quality agarwood for fragrance and medicinal industries
  • Shorter time to resin production in plantations
  • Conservation of genetically superior trees
  • Scalable and sustainable plantation models