FTIR spectroscopy for structural fingerprinting

Here’s a detailed overview of Fourier Transform Infrared (FTIR) Spectroscopy for structural fingerprinting:


1. Introduction

FTIR spectroscopy is an analytical technique used to identify functional groups and characterize molecular structures based on the absorption of infrared light.

  • It is widely used for structural fingerprinting of natural products, polymers, resins, and essential oils.
  • Each molecule has a unique IR absorption pattern, often called its “fingerprint region” (usually 400–1500 cm⁻¹).
  • In agarwood research, FTIR can detect sesquiterpenes, chromones, and other bioactive compounds in resin or extracts.

2. Principle

  • Molecules vibrate in specific modes (stretching, bending, twisting) when exposed to infrared radiation.
  • IR light is absorbed at frequencies corresponding to these vibrational modes.
  • The instrument records an absorbance vs. wavenumber (cm⁻¹) spectrum.

Key Regions:

Region (cm⁻¹)Vibrational TypeExample Functional Groups
4000–2500X–H stretchingO–H, N–H, C–H
2500–2000Triple bondsC≡C, C≡N
2000–1500Double bondsC=O, C=C
1500–400Fingerprint regionComplex skeletal vibrations unique to molecules

3. Sample Preparation

FTIR is versatile and can analyze solids, liquids, and gases.

  1. Solid samples
    • KBr pellet method: Mix sample with KBr powder and press into a transparent disc.
    • ATR (Attenuated Total Reflectance): Direct contact of solid with ATR crystal.
  2. Liquid samples
    • Drop placed on ATR crystal or sandwiched between IR-transparent windows (NaCl, KBr).
  3. Gaseous samples
    • Contained in gas cells with IR-transparent windows.

Advantages of ATR-FTIR: Minimal preparation, rapid, non-destructive.


4. Data Acquisition and Interpretation

  1. Obtain FTIR spectrum: Absorbance (or transmittance) vs wavenumber (cm⁻¹).
  2. Identify functional groups:
    • Compare peaks with known standards or reference tables.
    • Example: O–H stretch around 3400 cm⁻¹, C=O stretch around 1700 cm⁻¹.
  3. Fingerprint analysis:
    • The region 1500–400 cm⁻¹ provides a unique pattern for a compound.
    • Used for sample authentication, quality control, or comparison of extracts/resins.

5. Applications

  • Natural products & phytochemistry: Identifying sesquiterpenes, chromones, flavonoids.
  • Essential oils & resins: Structural fingerprinting to detect adulteration or quality.
  • Polymers & biomaterials: Confirming chemical modifications.
  • Pharmaceuticals: Functional group verification of active ingredients.
  • Food & flavor analysis: Detecting key aromatic compounds.

6. Advantages

  • Rapid and non-destructive analysis.
  • Minimal sample preparation (especially with ATR).
  • Provides functional group information and unique fingerprint region.
  • Can be combined with chemometric analysis for sample classification.

7. Limitations

  • Limited sensitivity compared to GC-MS or HPLC.
  • Cannot directly quantify complex mixtures without calibration or chemometrics.
  • Overlapping peaks may complicate interpretation.
  • Requires some expertise to assign peaks accurately.

Workflow Summary for FTIR Structural Fingerprinting

Sample collection → Sample preparation (solid/liquid/gas) → FTIR measurement → Spectrum acquisition → Functional group analysis → Fingerprint region comparison → Structural characterization